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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72238993_72239895_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
72238993 - 72239895
Intron Length:
903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTGCACCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTCTAACT
Flanking Amino Acid:
TSAVEYITGSKENLEEQSND
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
0.9
74.5
35.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
67
0.38
0.9
56.7
39.6
Minor 5ss
34.6
-1.8
2.9
40.8
39.3
Minor BPS
66.3
0.59
1.7
83.74
37.5

Associated Gene:

Gene:
PARVG
Ensembl Gene ID:
ENSAPLG00000003412
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003489
72224329 - 72247151
22823