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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72239952_72242121_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72239952 - 72242121
Intron Length:
2170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTTTGCTTAACA
Flanking Amino Acid:
NVQVETITVENTSKGLKTTS
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.9
89
24.5
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
81.6
0.71
0.9
77.5
35.6
Minor 5ss
39.4
-1.2
2.8
51.5
45
Minor BPS
81.5
0.99
1.6
91.36
30.2

Associated Gene:

Gene:
PARVG
Ensembl Gene ID:
ENSAPLG00000003412
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003489
72224329 - 72247151
22823