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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72242785_72243833_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72242785 - 72243833
Intron Length:
1049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCTGC
5'SS Class:
major
3'SS Sequence:
CTCTCTGTCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
ACCTTATTGATA
Flanking Amino Acid:
YDGLVLHHLLEKLGSLKLDV
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.68
1.1
64.1
43.4
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
65
0.34
1
65.6
33.8
Minor 5ss
43.8
-0.7
2.8
50.7
46
Minor BPS
49.4
-0
1.6
56.43
37.1

Associated Gene:

Gene:
PARVG
Ensembl Gene ID:
ENSAPLG00000003412
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003489
72224329 - 72247151
22823