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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72356780_72358110_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72356780 - 72358110
Intron Length:
1331

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTATTTATTT
Flanking Amino Acid:
QVEVLIDTCQGDDALPNGLD
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.4
0.64
0.9
77.8
35.5
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
58.1
0.33
1.8
76.23
41.2

Associated Gene:

Gene:
SAMM50
Ensembl Gene ID:
ENSAPLG00000002728
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029170
72346363 - 72363719
17357
ENSAPLT00000002799
72346363 - 72362133
15771