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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72362095_72363698_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72362095 - 72363698
Intron Length:
1604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGGGGCC
5'SS Class:
major
3'SS Sequence:
TGTATACTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
ACTATATTAAAT
Flanking Amino Acid:
MGTVYARSLEPLPMSGP
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.1
63
37.3
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
78.6
0.64
0.9
74.5
40.2
Minor 5ss
28.7
-2.4
3.7
32.9
42.5
Minor BPS
52.1
0.14
1.7
69.44
40.9

Associated Gene:

Gene:
SAMM50
Ensembl Gene ID:
ENSAPLG00000002728
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029170
72346363 - 72363719
17357