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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72370129_72370991_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
72370129 - 72370991
Intron Length:
863

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAAACTT
5'SS Class:
major
3'SS Sequence:
ATTTTGATTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TGTATTTTGATT
Flanking Amino Acid:
PVESAYSAAIRLVNWFPDMP
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
69.2
41.5
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
76.8
0.6
0.9
71.2
39
Minor 5ss
37.7
-1.4
3.5
57.7
46.4
Minor BPS
62.3
0.47
1.2
75.52
35.3

Associated Gene:

Gene:
PNPLA3
Ensembl Gene ID:
ENSAPLG00000002630
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002658
72367793 - 72383436
15644