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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72376021_72378621_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72376021 - 72378621
Intron Length:
2601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TTAATCTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CTTCTTTTAATC
Flanking Amino Acid:
GLIPPSFRGVRYVDGGISDN
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.9
77.1
37.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.8
0.65
0.9
74
36.3
Minor 5ss
37
-1.5
3
48.7
41.1
Minor BPS
67.2
0.52
1.2
70.66
35.2

Associated Gene:

Gene:
PNPLA3
Ensembl Gene ID:
ENSAPLG00000002630
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002658
72367793 - 72383436
15644