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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72378688_72379633_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72378688 - 72379633
Intron Length:
946

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TACCATTTAATT
Flanking Amino Acid:
NFNSKEEVVQALICSSFVPI
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
81.3
0.7
0.8
76.2
32.1
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
59.2
0.37
1.5
71.44
39.7

Associated Gene:

Gene:
PNPLA3
Ensembl Gene ID:
ENSAPLG00000002630
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002658
72367793 - 72383436
15644