About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72435174_72436613_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72435174 - 72436613
Intron Length:
1440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAATGT
5'SS Class:
major
3'SS Sequence:
TGCTTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTTGCTTTATTT
Flanking Amino Acid:
YPQPGLDIIKELTSPRLIKS
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
66
40.6
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
79.5
0.66
0.8
78
35.1
Minor 5ss
37.9
-1.4
3.4
56.7
47.4
Minor BPS
65.7
0.57
1.7
83.14
39

Associated Gene:

Gene:
SULT4A1
Ensembl Gene ID:
ENSAPLG00000002493
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002510
72411081 - 72445819
34739