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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72439527_72440556_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72439527 - 72440556
Intron Length:
1030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTAC
5'SS Class:
strong_major
3'SS Sequence:
TGCTCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TCATCTTTAAAT
Flanking Amino Acid:
LFLKYEDMHKDLATMVEQLV
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
78.4
32.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
82.3
0.73
0.8
76
32.6
Minor 5ss
39.1
-1.2
3.1
51.5
45.7
Minor BPS
73.2
0.81
1.3
81.97
39.4

Associated Gene:

Gene:
SULT4A1
Ensembl Gene ID:
ENSAPLG00000002493
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002510
72411081 - 72445819
34739