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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72440696_72445706_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72440696 - 72445706
Intron Length:
5011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAC
U12 Branch Point Sequence:
GTTCTCTCCACT
Flanking Amino Acid:
CNAEALPVGRGRVGLWKDIF
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
76.7
34.9
Major BPS
63.7
0.34
1.2
57
41.8
Major PPT
79
0.65
0.9
75.9
38
Minor 5ss
49.4
-0
2.4
57.9
46.7
Minor BPS
50.4
0.09
2
74.3
42.2

Associated Gene:

Gene:
SULT4A1
Ensembl Gene ID:
ENSAPLG00000002493
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002510
72411081 - 72445819
34739