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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72548006_72550447_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72548006 - 72550447
Intron Length:
2442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACAAACA
5'SS Class:
major
3'SS Sequence:
CCAACTTTGTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TATTTCTCACCC
Flanking Amino Acid:
RVIIQKPQKPMSPGPQTMSF
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.8
0.33
1.1
59.1
39.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
62
0.27
1
61.3
39.7
Minor 5ss
32.5
-2
3.2
41.4
44.8
Minor BPS
57.8
0.22
1.8
71.46
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025133
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041743
72544712 - 72553175
8464