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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72550598_72553052_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72550598 - 72553052
Intron Length:
2455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAAATTTTAAAG
Flanking Amino Acid:
GLLNIADFRQVLHEYKINLS
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76
34.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.9
0.7
0.8
76.8
31.9
Minor 5ss
42.3
-0.9
2.8
52.9
38.3
Minor BPS
53
-0
1.5
55.22
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025133
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041743
72544712 - 72553175
8464