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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72574054_72579382_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72574054 - 72579382
Intron Length:
5329

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTCTTTTAAAG
Flanking Amino Acid:
DILITHGPPLGFLDWVPKKM
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
77.3
32.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.8
0.58
1
78.1
28.1
Minor 5ss
33.3
-1.9
2.9
41.3
44.8
Minor BPS
58.1
0.12
1.5
61.29
40.8

Associated Gene:

Gene:
MPPED1
Ensembl Gene ID:
ENSAPLG00000013113
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013665
72570208 - 72620362
50155