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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72579499_72598851_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
72579499 - 72598851
Intron Length:
19353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGCAGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCTCTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAA
U12 Branch Point Sequence:
TAGCACTGAAGA
Flanking Amino Acid:
VRGFRIYGSPWQPWFYGWGF
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
65.4
46
Major BPS
62
0.3
1
53
34.1
Major PPT
75.3
0.57
0.9
72
32.5
Minor 5ss
38.9
-1.2
2.8
45.7
43.7
Minor BPS
46.2
-0.2
1.9
56.35
42

Associated Gene:

Gene:
MPPED1
Ensembl Gene ID:
ENSAPLG00000013113
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013665
72570208 - 72620362
50155