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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72599078_72614801_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72599078 - 72614801
Intron Length:
15724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTCACTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGTTTTTCACT
Flanking Amino Acid:
SEVKKFNEWLGSLPYEYKIV
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.9
90.9
28.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
75.2
0.57
0.9
73.1
37.2
Minor 5ss
40.3
-1.1
3.2
59.2
45.4
Minor BPS
65.3
0.56
1.7
82.67
39.4

Associated Gene:

Gene:
MPPED1
Ensembl Gene ID:
ENSAPLG00000013113
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013665
72570208 - 72620362
50155