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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72614984_72620210_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
72614984 - 72620210
Intron Length:
5227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GCATTTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TACTTTATAACC
Flanking Amino Acid:
QGRFQPPHVQMVDPVPHDAP
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
92.9
22.2
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
76.2
0.59
0.9
69.8
36.4
Minor 5ss
44.1
-0.6
2.9
65.1
39.1
Minor BPS
59.1
0.26
1.6
67.72
37.9

Associated Gene:

Gene:
MPPED1
Ensembl Gene ID:
ENSAPLG00000013113
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013665
72570208 - 72620362
50155