About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72693620_72695824_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72693620 - 72695824
Intron Length:
2205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGGA
5'SS Class:
strong_major
3'SS Sequence:
CCTGTGATTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTTAT
U12 Branch Point Sequence:
TATCCTGTGATT
Flanking Amino Acid:
GRLTGGSGGADVDECAEATD
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.8
75.2
35.1
Major BPS
73.7
0.59
1.2
65.7
43.2
Major PPT
72
0.5
1
61.7
43.3
Minor 5ss
29.8
-2.3
3.3
38.8
46.3
Minor BPS
50.4
0.09
2
72.94
38.4

Associated Gene:

Gene:
SCUBE1
Ensembl Gene ID:
ENSAPLG00000013297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032695
72693532 - 72832180
138649
ENSAPLT00000019506
72693532 - 72881316
187785
ENSAPLT00000013895
72693532 - 72904362
210831