About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72695948_72726212_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72695948 - 72726212
Intron Length:
30265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTGTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ACTTCTTTATCC
Flanking Amino Acid:
GYKGEGKQCEDIDECENDFY
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
79.6
33.9
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
82.6
0.73
0.9
81.2
36.5
Minor 5ss
33.5
-1.9
3.1
43.7
43.7
Minor BPS
66.4
0.49
1.6
72.26
39.3

Associated Gene:

Gene:
SCUBE1
Ensembl Gene ID:
ENSAPLG00000013297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013895
72693532 - 72904362
210831
ENSAPLT00000032695
72693532 - 72832180
138649
ENSAPLT00000019506
72693532 - 72881316
187785