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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72744371_72801348_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72744371 - 72801348
Intron Length:
56978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CTTTCTTTTACA
Flanking Amino Acid:
NQHTCIHRSIEGMNCMNKDH
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
85.9
25.4
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
91.9
0.94
0.6
87.1
23.5
Minor 5ss
43.9
-0.7
2.8
55
43.6
Minor BPS
70.8
0.65
1.6
78.96
37.6

Associated Gene:

Gene:
SCUBE1
Ensembl Gene ID:
ENSAPLG00000013297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032695
72693532 - 72832180
138649
ENSAPLT00000019506
72693532 - 72881316
187785
ENSAPLT00000013895
72693532 - 72904362
210831