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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72801475_72810829_F

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
72801475 - 72810829
Intron Length:
9355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAGGTAGA
5'SS Class:
major
3'SS Sequence:
GGGGCTTAATTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TACTCATTCATT
Flanking Amino Acid:
ELAKNQKDCKLTCNYGNGGC
Intron Amino Acid Position:
201

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1.1
71
40.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
50.7
0.02
1.1
48.5
44.1
Minor 5ss
36.1
-1.6
3.1
45.9
42.7
Minor BPS
53.6
0.19
2
74.1
42.9

Associated Gene:

Gene:
SCUBE1
Ensembl Gene ID:
ENSAPLG00000013297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019506
72693532 - 72881316
187785
ENSAPLT00000013895
72693532 - 72904362
210831
ENSAPLT00000032695
72693532 - 72832180
138649