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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72810947_72813862_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72810947 - 72813862
Intron Length:
2916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATTAA
U12 Branch Point Sequence:
TGTCCCTTACTT
Flanking Amino Acid:
ALHSDGRTCIEKDEAAIESS
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
86.2
29.2
Major BPS
60.4
0.26
1.2
52.1
43.5
Major PPT
72.8
0.51
0.9
69.7
41
Minor 5ss
38.5
-1.3
2.8
49.8
40.3
Minor BPS
67.7
0.63
1.6
82.31
39.1

Associated Gene:

Gene:
SCUBE1
Ensembl Gene ID:
ENSAPLG00000013297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032695
72693532 - 72832180
138649