Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72810947_72832001_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

72810947 - 72832001

Intron Length:

21055

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTACT

5'SS Class:

strong_major

3'SS Sequence:

TTTCATTCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTTTTTTTCATT

Flanking Amino Acid:

ALHSDGRTCIETCAVNNGGC

Intron Amino Acid Position:

240

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.2

0.95

0.8

86.2

29.2

Major BPS

100

1.24

0.5

100

Major PPT

86.3

0.82

0.7

81.2

30.4

Minor 5ss

38.5

-1.3

2.8

49.8

40.3

Minor BPS

67.5

0.63

1.7

86.64

33.8

Associated Gene:

Gene:

SCUBE1

Ensembl Gene ID:

ENSAPLG00000013297

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019506

72693532 - 72881316

187785

ENSAPLT00000013895

72693532 - 72904362

210831