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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72813953_72832001_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72813953 - 72832001
Intron Length:
18049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAACACTT
5'SS Class:
major
3'SS Sequence:
TTTCATTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
DKRVKRRLLMETCAVNNGGC
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.2
66.4
45.1
Major BPS
100
1.24
0.5
100
0
Major PPT
86.3
0.82
0.7
81.2
30.4
Minor 5ss
43
-0.8
3.2
57.7
46.4
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
SCUBE1
Ensembl Gene ID:
ENSAPLG00000013297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032695
72693532 - 72832180
138649