Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72853820_72878408_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

72853820 - 72878408

Intron Length:

24589

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATTCTT

5'SS Class:

strong_major

3'SS Sequence:

TCTGTGTATTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTCAA

U12 Branch Point Sequence:

TGAATTCTAACT

Flanking Amino Acid:

KLLTDERTCQDIDECSFERT

Intron Amino Acid Position:

320

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.9

0.87

0.9

83.7

34.8

Major BPS

85.7

0.89

0.8

85.9

22.5

Major PPT

0.59

73.3

41.1

Minor 5ss

40.2

-1.1

3.1

59.2

45.2

Minor BPS

52.8

0.17

1.7

70.88

39.6

Associated Gene:

Gene:

SCUBE1

Ensembl Gene ID:

ENSAPLG00000013297

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019506

72693532 - 72881316

187785

ENSAPLT00000013895

72693532 - 72904362

210831