Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72878526_72880074_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

72878526 - 72880074

Intron Length:

1549

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTTGGAAA

5'SS Class:

major

3'SS Sequence:

ATTACATTTTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

ATATTATTAATA

Flanking Amino Acid:

YTLYGLTHCGDIDECSISNG

Intron Amino Acid Position:

359

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.1

0.5

1.2

68.7

37.3

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

78.6

0.64

0.9

74.5

39.6

Minor 5ss

-1.8

2.9

39.8

45.9

Minor BPS

0.43

1.5

71.6

33.9

Associated Gene:

Gene:

SCUBE1

Ensembl Gene ID:

ENSAPLG00000013297

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013895

72693532 - 72904362

210831