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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72883590_72885169_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72883590 - 72885169
Intron Length:
1580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTACA
5'SS Class:
major
3'SS Sequence:
TTGTGCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTGAC
U12 Branch Point Sequence:
TGTGTGTTGACT
Flanking Amino Acid:
SCPSNTLFVPDSENSYTLSC
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
74.5
35.3
Major BPS
71.3
0.53
1.1
63.1
44.5
Major PPT
80.2
0.68
0.9
73.7
36.9
Minor 5ss
38.5
-1.3
2.3
44.3
43
Minor BPS
51.3
0.12
2.2
75.02
42.2

Associated Gene:

Gene:
SCUBE1
Ensembl Gene ID:
ENSAPLG00000013297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013895
72693532 - 72904362
210831