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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72886790_72888765_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72886790 - 72888765
Intron Length:
1976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
TTCCCTTGTACA
Flanking Amino Acid:
TKDTGKQAVLDNCHVTFVNL
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
72.7
0.56
1
75
30.1
Major PPT
79.9
0.67
0.9
75.3
33.2
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
50
-0
1.8
65.48
40.6

Associated Gene:

Gene:
SCUBE1
Ensembl Gene ID:
ENSAPLG00000013297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013895
72693532 - 72904362
210831