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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72888904_72890055_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72888904 - 72890055
Intron Length:
1152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTGAA
5'SS Class:
major
3'SS Sequence:
ATTTCCCATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
GTTTTCTTATCA
Flanking Amino Acid:
EVEMKLEEVSDTCNIDCVRK
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
71.4
33.7
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
72.2
0.5
0.9
64.1
37.6
Minor 5ss
34.4
-1.8
2.9
40.7
45.6
Minor BPS
71.3
0.67
1.5
79.75
36.3

Associated Gene:

Gene:
SCUBE1
Ensembl Gene ID:
ENSAPLG00000013297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013895
72693532 - 72904362
210831