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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72890260_72891692_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72890260 - 72891692
Intron Length:
1433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
AAGTCCTTATGC
Flanking Amino Acid:
TGQVLQDGKCVTCSMGTFYS
Intron Amino Acid Position:
622

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
74.1
36.5
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
91.9
0.94
0.6
91.8
19.1
Minor 5ss
34.7
-1.7
2.9
41.5
39.2
Minor BPS
52.8
0.07
1.9
61.83
43.4

Associated Gene:

Gene:
SCUBE1
Ensembl Gene ID:
ENSAPLG00000013297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013895
72693532 - 72904362
210831