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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72891855_72895422_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72891855 - 72895422
Intron Length:
3568

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCAATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCATTTTCAATT
Flanking Amino Acid:
AGARNVSECGGQCSPGHYSS
Intron Amino Acid Position:
676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98
1.13
0.7
84.1
34
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
78.7
0.65
0.8
70.5
39.9
Minor 5ss
33.5
-1.9
4
49
47.2
Minor BPS
59.3
0.37
1.5
72.06
39.7

Associated Gene:

Gene:
SCUBE1
Ensembl Gene ID:
ENSAPLG00000013297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013895
72693532 - 72904362
210831