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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72895591_72896471_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72895591 - 72896471
Intron Length:
881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATTTC
5'SS Class:
strong_major
3'SS Sequence:
TCATACTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
ACTTTCTGAAAA
Flanking Amino Acid:
AVSFQDCETKVHCSPGHYYN
Intron Amino Acid Position:
732

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
27.1
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
79.4
0.66
0.9
73.2
36.6
Minor 5ss
38.7
-1.3
3
52
45.2
Minor BPS
59.7
0.3
1.5
67.67
38.4

Associated Gene:

Gene:
SCUBE1
Ensembl Gene ID:
ENSAPLG00000013297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013895
72693532 - 72904362
210831