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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72898895_72901775_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72898895 - 72901775
Intron Length:
2881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TAATCTTTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATTTATTTAATC
Flanking Amino Acid:
CGDVLVMRKSASPTSITTYE
Intron Amino Acid Position:
852

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
74.9
36.2
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
73.2
0.52
0.9
66.1
40.2
Minor 5ss
40.7
-1
2.8
49.7
41.9
Minor BPS
71.1
0.64
1.4
77.61
31.7

Associated Gene:

Gene:
SCUBE1
Ensembl Gene ID:
ENSAPLG00000013297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013895
72693532 - 72904362
210831