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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72901929_72902979_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72901929 - 72902979
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAGTG
5'SS Class:
major
3'SS Sequence:
GTTTATTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TGATGTTTATTT
Flanking Amino Acid:
GFQVPYVTYDEDYQQLIEDI
Intron Amino Acid Position:
903

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
0.9
67.7
37.5
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
87.4
0.84
0.8
84.8
35.4
Minor 5ss
28.7
-2.4
3.4
35.1
42.4
Minor BPS
49.4
0.04
2
69.05
42.4

Associated Gene:

Gene:
SCUBE1
Ensembl Gene ID:
ENSAPLG00000013297
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013895
72693532 - 72904362
210831