About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72933335_72938824_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72933335 - 72938824
Intron Length:
5490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTCGG
5'SS Class:
major
3'SS Sequence:
TTTTCGATCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAT
U12 Branch Point Sequence:
AAATGTTTGATA
Flanking Amino Acid:
ESLRRKLRGEVFDAGDYFGI
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
59.7
46.7
Major BPS
78.6
0.71
1.2
71.4
45.1
Major PPT
80.2
0.68
0.9
77.8
35.1
Minor 5ss
26.8
-2.7
2.9
31.8
42.6
Minor BPS
49.3
-0
1.7
57.42
36

Associated Gene:

Gene:
TTLL12
Ensembl Gene ID:
ENSAPLG00000008852
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009260
72933215 - 72958943
25729