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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72938998_72940867_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
72938998 - 72940867
Intron Length:
1870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
AATTTTCTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATTTTCTTTAAG
Flanking Amino Acid:
ENGLQASNPDSIFLIDHAWT
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.9
30.1
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
73.4
0.53
1.1
76.7
36.8
Minor 5ss
32
-2.1
2.8
42.5
44.3
Minor BPS
57.6
0.09
1.8
66.56
41.1

Associated Gene:

Gene:
TTLL12
Ensembl Gene ID:
ENSAPLG00000008852
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009260
72933215 - 72958943
25729