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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72942132_72942784_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
72942132 - 72942784
Intron Length:
653

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TACTCCTCAAAG
Flanking Amino Acid:
LWPLRDLETGDEVTRDYAYG
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
74.5
41.9
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
82.6
0.73
0.9
77.3
37
Minor 5ss
43.1
-0.8
2.9
54.7
43.7
Minor BPS
58.3
0.12
1.8
62.51
44.7

Associated Gene:

Gene:
TTLL12
Ensembl Gene ID:
ENSAPLG00000008852
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009260
72933215 - 72958943
25729