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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72942919_72946874_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72942919 - 72946874
Intron Length:
3956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAGTT
5'SS Class:
strong_major
3'SS Sequence:
AACTTTTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTCATATTAACT
Flanking Amino Acid:
TPEPSDEHYQAILAENKEKL
Intron Amino Acid Position:
263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
80.7
31.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
79.3
0.66
0.8
77.6
35.8
Minor 5ss
42.5
-0.8
3.5
64.3
47.2
Minor BPS
65.3
0.56
1.6
81.54
39.8

Associated Gene:

Gene:
TTLL12
Ensembl Gene ID:
ENSAPLG00000008852
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009260
72933215 - 72958943
25729