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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72946952_72951502_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
72946952 - 72951502
Intron Length:
4551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTACGTATC
5'SS Class:
major
3'SS Sequence:
CTTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTCTTCTTCATA
Flanking Amino Acid:
PPVYDKDKVFKVFTDIQQVL
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
79.2
34.9
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
87.7
0.85
0.6
81.2
30.8
Minor 5ss
40.9
-1
3
54.3
37
Minor BPS
63.7
0.42
1.7
74.1
38.6

Associated Gene:

Gene:
TTLL12
Ensembl Gene ID:
ENSAPLG00000008852
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009260
72933215 - 72958943
25729