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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72955334_72957153_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72955334 - 72957153
Intron Length:
1820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTCTGTCATT
Flanking Amino Acid:
YPEYPWTTVQANIFKAFAEL
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
71.6
40.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
74.8
0.56
0.9
75
34.7
Minor 5ss
35.3
-1.7
2.9
41.6
39
Minor BPS
53.6
0.19
2.4
82.98
39.3

Associated Gene:

Gene:
TTLL12
Ensembl Gene ID:
ENSAPLG00000008852
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009260
72933215 - 72958943
25729