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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72964297_72967160_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
72964297 - 72967160
Intron Length:
2864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TACCCCTTACAT
Flanking Amino Acid:
PVWGTLYTSMGYGSYLVWKE
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
80.5
35
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
56.3
0.21
2.4
67
44.2
Minor BPS
56.3
0.28
1.8
72.09
44.2

Associated Gene:

Gene:
TSPO
Ensembl Gene ID:
ENSAPLG00000008915
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009262
72963071 - 72967348
4278