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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72980784_72981308_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
72980784 - 72981308
Intron Length:
525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGAGTT
5'SS Class:
major
3'SS Sequence:
TTTCCTCCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCATTTCTAATG
Flanking Amino Acid:
TKRIAGYGSWICRLPFRCVC
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
71.6
38.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
82.1
0.72
0.7
77.4
24.5
Minor 5ss
42
-0.9
3.5
56.1
48.1
Minor BPS
50.2
-0.1
1.7
55.83
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008918
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009268
72980682 - 72985106
4425