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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72981421_72982501_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
72981421 - 72982501
Intron Length:
1081

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTTAC
5'SS Class:
strong_major
3'SS Sequence:
GTTTAATCATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
TCTTGTTTAATC
Flanking Amino Acid:
IEDTLLHLAHGVAVSVFQTW
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74.5
32.2
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
70.6
0.46
1
68.2
42.1
Minor 5ss
34.6
-1.8
2.8
35.2
41.4
Minor BPS
65.4
0.46
1.7
73.34
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008918
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009268
72980682 - 72985106
4425