Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_72982604_72984975_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

72982604 - 72984975

Intron Length:

2372

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATCATGC

5'SS Class:

weak_major

3'SS Sequence:

GAATGCCTTCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTAAT

U12 Branch Point Sequence:

ATATCCTGAATG

Flanking Amino Acid:

DTAEQMEFNISSAVQVGHHL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.4

0.43

1.2

59.5

40.7

Major BPS

82.2

0.8

0.9

81.6

Major PPT

66.7

0.38

55.1

45.2

Minor 5ss

49.9

-0

2.5

68.6

42.3

Minor BPS

66.9

0.39

1.5

68.01

39.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000008918

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009268

72980682 - 72985106

4425