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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73012357_73014155_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73012357 - 73014155
Intron Length:
1799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTGAT
U12 Branch Point Sequence:
AATTTGATATCT
Flanking Amino Acid:
VAENEDWNFYWMSVQTIRNV
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.93
0.8
82.4
29.8
Major BPS
87.6
0.93
0.8
77.4
37.3
Major PPT
87.9
0.85
0.7
85.6
29.1
Minor 5ss
36.2
-1.6
2.6
40.7
39.2
Minor BPS
44.3
-0.3
2.4
68.12
42.5

Associated Gene:

Gene:
TTLL1
Ensembl Gene ID:
ENSAPLG00000009209
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009611
73012244 - 73021427
9184