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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73016562_73016628_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
73016562 - 73016628
Intron Length:
67

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAAGCTC
5'SS Class:
major
3'SS Sequence:
AAATGGTCTCGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ACTCTCTCAAAT
Flanking Amino Acid:
PSSTWIMKPCDSKTSSFVSQ
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
62.9
41.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
46.5
-0.2
1.7
43.8
46.7
Minor 5ss
34.8
-1.7
3.5
47.1
43.1
Minor BPS
53.1
0.17
1.6
69.3
41.2

Associated Gene:

Gene:
TTLL1
Ensembl Gene ID:
ENSAPLG00000009209
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009611
73012244 - 73021427
9184