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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73016645_73017702_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73016645 - 73017702
Intron Length:
1058

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTC|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
TGATGTCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ACATTCTGAAAC
Flanking Amino Acid:
IMKPCDSKTSSFVSQSSKEA
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.3
71.5
38.5
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
76.4
0.59
1
69
41.8
Minor 5ss
36.9
-1.5
3.3
51.3
39.7
Minor BPS
53.3
0.08
1.5
59.68
38.8

Associated Gene:

Gene:
TTLL1
Ensembl Gene ID:
ENSAPLG00000009209
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009611
73012244 - 73021427
9184