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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73017838_73017995_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73017838 - 73017995
Intron Length:
158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGATTG
5'SS Class:
major
3'SS Sequence:
TTTTGCATTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CACACTTTAATG
Flanking Amino Acid:
VSTYRPLRCYMYKLGFCRFC
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
74.5
36.6
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
73.6
0.53
1.1
76.9
36.3
Minor 5ss
44
-0.7
3.1
61
43.6
Minor BPS
56.1
0.05
1.5
52.57
42.8

Associated Gene:

Gene:
TTLL1
Ensembl Gene ID:
ENSAPLG00000009209
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009611
73012244 - 73021427
9184