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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73076371_73077024_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
73076371 - 73077024
Intron Length:
654

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAGCAG
5'SS Class:
major
3'SS Sequence:
ATCTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TGTTCCAGATGC
Flanking Amino Acid:
QKPWAKKLKEVEAAKKAYHA
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.1
54
44.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
82.9
0.74
0.7
81.5
29.8
Minor 5ss
28.4
-2.5
3.5
37.7
47.1
Minor BPS
44.5
-0.4
2.2
61.27
43.4

Associated Gene:

Gene:
PACSIN2
Ensembl Gene ID:
ENSAPLG00000009134
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009543
73061864 - 73090550
28687