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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_73078439_73081206_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
73078439 - 73081206
Intron Length:
2768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTGTACTAAATT
Flanking Amino Acid:
QKHLDLSNVASYKNIYRELE
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
86.6
0.82
0.8
81.1
35.9
Minor 5ss
34.9
-1.7
3.3
47.4
48
Minor BPS
56.1
0.27
1.9
73.53
43.5

Associated Gene:

Gene:
PACSIN2
Ensembl Gene ID:
ENSAPLG00000009134
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009543
73061864 - 73090550
28687